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אסיף מאגר המחקר החקלאי
פותח על ידי קלירמאש פתרונות בע"מ -
Genome sequence of the pea aphid Acyrthosiphon pisum
Year:
2010
Source of publication :
PLoS Biology
Authors :
גנאים, מוראד
;
.
דומברובסקי, אביב
;
.
Volume :
8
Co-Authors:
Richards, S., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Gibbs, R.A., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Gerardo, N.M., Department of Biology, Emory University, O. Wayne Rollins Research Center, Atlanta, GA, United States
Moran, N., Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States
Nakabachi, A., Advanced Science Institute, Saitama, Japan
Stern, D., Howard Hughes Medical Institute, Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, United States
Tagu, D., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Wilson, A.C.C., Department of Biology, University of Miami, Coral Gables, FL, United States
Muzny, D., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Kovar, C., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Cree, A., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Chacko, J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Chandrabose, M.N., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Dao, M.D., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Dinh, H.H., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Gabisi, R.A., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Hines, S., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Hume, J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Jhangian, S.N., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Joshi, V., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Lewis, L.R., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Liu, Y.-S., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Lopez, J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Morgan, M.B., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Nguyen, N.B., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Okwuonu, G.O., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Ruiz, S.J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Santibanez, J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Wright, R.A., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Fowler, G.R., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Hitchens, M.E., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Lozado, R.J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Moen, C., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Steffen, D., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Warren, J.T., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Zhang, J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Nazareth, L.V., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Chavez, D., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Davis, C., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Lee, S.L., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Patel, B.M., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Pu, L.-L., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Bell, S.N., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Johnson, A.J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Vattathil, S., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Williams Jr., R.L., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Shigenobu, S., Howard Hughes Medical Institute, Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, United States, PRESTO, JST, 4-1-8 Honcho Kawaguchi, Saitama, 332-0012, Japan, Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Higashiyama, Myodaiji, Okazaki, Japan
Dang, P.M., USDA, ARS, National Peanut Research Laboratory, Dawson, GA, United States
Morioka, M., Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo, Japan
Fukatsu, T., National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
Kudo, T., Discovery Research Institute, Saitama, Japan
Miyagishima, S.-Y., Advanced Science Institute, Saitama, Japan
Jiang, H., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Worley, K.C., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Legeai, F., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Gauthier, J.-P., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Collin, O., CNRS, IRISA, EPI Symbiose, Rennes, France
Zhang, L., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Chen, H.-C., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Ermolaeva, O., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Hlavina, W., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Kapustin, Y., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Kiryutin, B., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Kitts, P., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Maglott, D., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Murphy, T., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Pruitt, K., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Sapojnikov, V., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Souvorov, A., USDA, ARS, National Peanut Research Laboratory, Dawson, GA, United States
Thibaud-Nissen, F., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Câmara, F., Center de Regulació Genòmica, Universitat Pompeu Fabra, Barcelona, Spain
Guigó, R., Center de Regulació Genòmica, Universitat Pompeu Fabra, Barcelona, Spain, Research Group in Biomedical Informatics, Universitat Pompeu Fabra, Barcelona, Spain, Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Stanke, M., Institut für Mikrobiologie und Genetik, Abteilung für Bioinformatik, Göttingen, Germany
Solovyev, V., Department of Computer Science, Royal Holloway, University of London, Surrey, United Kingdom
Kosarev, P., Softberry Inc., Mount Kisco, NY, United States
Gilbert, D., Department of Biology, Indiana University, Bloomington, IN, United States
Gabaldón, T., Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Huerta-Cepas, J., Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Marcet-Houben, M., Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Pignatelli, M., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, CIBER en Epidemiología y Salud Pública (CIBEResp), Centro Superior de Investigación en Salud Pública (CSISP), Conselleria de Sanidad (Generalitat Valenciana), València, Spain
Moya, A., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, CIBER en Epidemiología y Salud Pública (CIBEResp), Centro Superior de Investigación en Salud Pública (CSISP), Conselleria de Sanidad (Generalitat Valenciana), València, Spain
Rispe, C., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Ollivier, M., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Quesneville, H., Unité de Recherches en Génomique-Info (UR INRA 1164), INRA, Centre de Recherche de Versailles, Versailles Cedex, France
Permal, E., Unité de Recherches en Génomique-Info (UR INRA 1164), INRA, Centre de Recherche de Versailles, Versailles Cedex, France
Llorens, C., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, Biotechvana, Parc Cientific, Universitat de València, València, Spain
Futami, R., Biotechvana, Parc Cientific, Universitat de València, València, Spain
Hedges, D., Miami Institute for Human Genomics, 1120 NW 14th Street, Miami, FL, United States
Robertson, H.M., Department of Entomology, University of Illinois, Urbana-Champaign, IL, United States
Alioto, T., Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Mariotti, M., Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Nikoh, N., Division of Natural Sciences, Open University of Japan, Wakaba, Chiba, Japan
McCutcheon, J.P., Center for Insect Science, University of Arizona, Tucson, AZ, United States
Burke, G., Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States
Kamins, A., Department of Biology, Emory University, O. Wayne Rollins Research Center, Atlanta, GA, United States
Latorre, A., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, CIBER en Epidemiología y Salud Pública (CIBEResp), Centro Superior de Investigación en Salud Pública (CSISP), Conselleria de Sanidad (Generalitat Valenciana), València, Spain
Ashton, P., Department of Biology, University of York, York, United Kingdom
Calevro, F., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Charles, H., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Colella, S., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Douglas, A.E., Department of Entomology, Cornell University, Ithaca, NY, United States
Jander, G., Boyce Thompson Institute for Plant Research, Ithaca, NY, United States
Jones, D.H., Department of Biology, University of Miami, Coral Gables, FL, United States
Febvay, G., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Kamphuis, L.G., CSIRO Entomology, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia, CSIRO Plant Industry, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia
Kushlan, P.F., Department of Biology, University of Miami, Coral Gables, FL, United States
Macdonald, S., Department of Biology, University of York, York, United Kingdom
Ramsey, J., Boyce Thompson Institute for Plant Research, Ithaca, NY, United States
Schwartz, J., Department of Biology, University of Miami, Coral Gables, FL, United States
Seah, S., CSIRO Plant Industry, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia
Thomas, G., Department of Biology, University of York, York, United Kingdom
Vellozo, A., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France, Université de Lyon, CNRS, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France
Cass, B., Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States
Degnan, P., Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States
Hurwitz, B., Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States
Leonardo, T., Howard Hughes Medical Institute, Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, United States
Koga, R., National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
Altincicek, B., Interdisciplinary Research Center, Institute of Phytopathology and Applied Zoology, Justus-Liebig-University of Giessen, Giessen, Germany
Anselme, C., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France, UMR Interactions Biotiques et Santé Végétale, INRA 1301, Université de Nice-Sophia Antipolis, Sophia-Antipolis Cedex, France
Atamian, H., Graduate Program in Genetics, Genomics and Bioinformatics, Department of Nematology, University of California, Riverside, CA, United States
Barribeau, S.M., Department of Biology, Emory University, O. Wayne Rollins Research Center, Atlanta, GA, United States
De Vos, M., Boyce Thompson Institute for Plant Research, Ithaca, NY, United States
Duncan, E.J., National Research Centre for Growth and Development, Department of Biochemistry, University of Otago, Dunedin, New Zealand
Evans, J., USDA-ARS, Bee Research Laboratoy, Beltsville, MD, United States
Ghanim, M., Department of Entomology, Volcani Center, Bet Dagan, Israel
Heddi, A., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Kaloshian, I., Graduate Program in Genetics, Genomics and Bioinformatics, Department of Nematology, University of California, Riverside, CA, United States
Vincent-Monegat, C., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Parker, B.J., Department of Biology, Emory University, O. Wayne Rollins Research Center, Atlanta, GA, United States
Pérez-Brocal, V., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Rahbé, Y., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Spragg, C.J., Department of Biology, Emory University, O. Wayne Rollins Research Center, Atlanta, GA, United States
Tamames, J., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, CIBER en Epidemiología y Salud Pública (CIBEResp), Centro Superior de Investigación en Salud Pública (CSISP), Conselleria de Sanidad (Generalitat Valenciana), València, Spain
Tamarit, D., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Tamborindeguy, C., Department of Entomology, Texas A and M University, College Station, TX, United States
Vilcinskas, A., Interdisciplinary Research Center, Institute of Phytopathology and Applied Zoology, Justus-Liebig-University of Giessen, Giessen, Germany
Bickel, R.D., Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States
Brisson, J.A., Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States
Butts, T., Department of Zoology, University of Oxford, Oxford, United Kingdom
Chang, C.-C., Department of Entomology, College of Bio-Resources and Agriculture, National Taiwan University, Taipei, Taiwan
Christiaens, O., Lab. Agrozoology, Department Crop Protection, Ghent University, Ghent, Belgium
Davis, G.K., Department of Biology, Bryn Mawr College, Bryn Mawr, PA, United States
Duncan, E., National Research Centre for Growth and Development, Department of Biochemistry, University of Otago, Dunedin, New Zealand
Ferrier, D., Scottish Oceans Institute, University of St. Andrews, St. Andrews, Fife, United Kingdom
Iga, M., Lab. Agrozoology, Department Crop Protection, Ghent University, Ghent, Belgium
Janssen, R., Department of Earth Sciences, Palaeobiology, Uppsala University, Uppsala, Sweden
Lu, H.-L., Department of Entomology, College of Bio-Resources and Agriculture, National Taiwan University, Taipei, Taiwan
McGregor, A., University of Veterinary Medicine Vienna, Institut für Populations-genetik, Veterinärmedizinische Universität Wien, Vienna, Austria
Miura, T., Graduate School of Environmental Science, Hokkaido University, Sapporo, Japan
Smagghe, G., Lab. Agrozoology, Department Crop Protection, Ghent University, Ghent, Belgium
Smith, J., National Research Centre for Growth and Development, Department of Biochemistry, University of Otago, Dunedin, New Zealand
Van Der Zee, M., Institute for Biology, Leiden University, Leiden, Netherlands
Velarde, R., Department of Biology, Wake Forest University, Winston-Salem, NC, United States
Wilson, M., National Research Centre for Growth and Development, Department of Biochemistry, University of Otago, Dunedin, New Zealand
Dearden, P., National Research Centre for Growth and Development, Department of Biochemistry, University of Otago, Dunedin, New Zealand
Edwards, O.R., CSIRO Entomology, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia, Cooperative Research Centre for National Plant Biosecurity, Canberra, ACT, Australia
Gordon, K., CSIRO Entomology, Black Mountain Laboratories, Acton, NSW, Australia
Hilgarth, R.S., Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, United States
Rider Jr., S.D., Department of Pathobiology, Texas A and M University, College Station, TX, United States
Srinivasan, D., Howard Hughes Medical Institute, Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, United States
Walsh, T.K., CSIRO Entomology, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia
Ishikawa, A., Graduate School of Environmental Science, Hokkaido University, Sapporo, Japan
Jaubert-Possamai, S., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Fenton, B., Plant Pathology, SCRI, Invergowrie and The Scottish Crop Research Institute, Dundee, United Kingdom
Huang, W., Department of Biology, University of Miami, Coral Gables, FL, United States
Rizk, G., Université de Rennes 1, IRISA, EPI Symbiose, Rennes, France
Lavenier, D., ENS Cachan, INRIA, EPI Symbiose, Rennes, France
Nicolas, J., INRIA, IRISA, EPI Symbiose, Rennes, France
Smadja, C., Animal and Plant Sciences Department, University of Sheffield, United Kingdom
Zhou, J.-J., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Vieira, F.G., Departament de Genètica, Universitat de Barcelona, Barcelona, Spain
He, X.-L., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Liu, R., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Rozas, J., Departament de Genètica, Universitat de Barcelona, Barcelona, Spain
Field, L.M., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Campbell, P., CSIRO Entomology, Black Mountain Laboratories, Acton, NSW, Australia
Carolan, J.C., UCD School of Biology and Environmental Science, University College Dublin, Ireland
Fitzroy, C.I.J., UCD School of Biology and Environmental Science, University College Dublin, Ireland
Reardon, K.T., UCD School of Biology and Environmental Science, University College Dublin, Ireland
Reeck, G.R., Cooperative Research Centre for National Plant Biosecurity, Canberra, ACT, Australia, Department of Biochemistry, Kansas State University, Manhattan, KS, United States
Singh, K., CSIRO Plant Industry, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia
Wilkinson, T.L., UCD School of Biology and Environmental Science, University College Dublin, Ireland
Huybrechts, J., Research Group of Functional Genomics and Proteomics, Leuven, Belgium
Abdel-Latief, M., Freie Universität Berlin, Institut für Angewandte Zoologie, Berlin, Germany
Robichon, A., UMR Interactions Biotiques et Santé Végétale, INRA 1301, Université de Nice-Sophia Antipolis, Sophia-Antipolis Cedex, France
Veenstra, J.A., Université de Bordeaux, CNRS, Talence, France
Hauser, F., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Cazzamali, G., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Schneider, M., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Williamson, M., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Stafflinger, E., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Hansen, K.K., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Grimmelikhuijzen, C.J.P., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Price, D.R.G., School of Biological and Biomedical Sciences, Durham University, Durham, United Kingdom
Caillaud, M., Department of Biology, Ithaca College, Ithaca, NY, United States
Van Fleet, E., Department of Biology, Ithaca College, Ithaca, NY, United States
Ren, Q., J. Craig Venter Institute, Rockville, MD, United States
Gatehouse, J.A., School of Biological and Biomedical Sciences, Durham University, Durham, United Kingdom
Brault, V., INRA UMR SVQV, Equipe Virologie Vection, Colmar, France
Monsion, B., INRA UMR SVQV, Equipe Virologie Vection, Colmar, France
Diaz, J., Department of Biology, Ithaca College, Ithaca, NY, United States
Hunnicutt, L., Genomic Sciences Program, North Carolina State University, Raleigh, NC, United States
Ju, H.-J., Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY, United States
Pechuan, X., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Aguilar, J., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Cortés, T., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Ortiz-Rivas, B., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Martínez-Torres, D., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Dombrovsky, A., Department of Virology, Volcani Center, Bet Dagan, Israel
Dale, R.P., Syngenta, Jealotts Hill Research Centre, Bracknell, Berkshire, United Kingdom
Davies, T.G.E., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Williamson, M.S., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Jones, A., MRC Functional Genomics Unit, Department of Phisology, Anatomy and Genetics, University of Oxford, Oxford, United Kingdom
Sattelle, D., MRC Functional Genomics Unit, Department of Phisology, Anatomy and Genetics, University of Oxford, Oxford, United Kingdom
Williamson, S., Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom
Wolstenholme, A., Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom
Cottret, L., Université de Lyon, CNRS, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France
Sagot, M.F., Université de Lyon, CNRS, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France
Heckel, D.G., Max Planck Institute for Chemical Ecology, Jena, Germany
Hunter, W., United States Department of Agriculture, Agriculture Research Service, U.S. Horticultural Research Lab., Fort Pierce, FL, United States
Facilitators :
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Abstract:
Aphids are important agricultural pests and also biological models for studies of insect-plant interactions, symbiosis, virus vectoring, and the developmental causes of extreme phenotypic plasticity. Here we present the 464 Mb draft genome assembly of the pea aphid Acyrthosiphon pisum. This first published whole genome sequence of a basal hemimetabolous insect provides an outgroup to the multiple published genomes of holometabolous insects. Pea aphids are host-plant specialists, they can reproduce both sexually and asexually, and they have coevolved with an obligate bacterial symbiont. Here we highlight findings from whole genome analysis that may be related to these unusual biological features. These findings include discovery of extensive gene duplication in more than 2000 gene families as well as loss of evolutionarily conserved genes. Gene family expansions relative to other published genomes include genes involved in chromatin modification, miRNA synthesis, and sugar transport. Gene losses include genes central to the IMD immune pathway, selenoprotein utilization, purine salvage, and the entire urea cycle. The pea aphid genome reveals that only a limited number of genes have been acquired from bacteria; thus the reduced gene count of Buchnera does not reflect gene transfer to the host genome. The inventory of metabolic genes in the pea aphid genome suggests that there is extensive metabolite exchange between the aphid and Buchnera, including sharing of amino acid biosynthesis between the aphid and Buchnera. The pea aphid genome provides a foundation for post-genomic studies of fundamental biological questions and applied agricultural problems.
Note:
Related Files :
DNA
Genome
immune system
neuropeptide
plant
Symbiosis
עוד תגיות
תוכן קשור
More details
DOI :
10.1371/journal.pbio.1000313
Article number:
Affiliations:
Database:
סקופוס
Publication Type:
מאמר
;
.
Language:
אנגלית
Editors' remarks:
ID:
20027
Last updated date:
02/03/2022 17:27
Creation date:
16/04/2018 23:33
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Genome sequence of the pea aphid Acyrthosiphon pisum
8
Richards, S., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Gibbs, R.A., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Gerardo, N.M., Department of Biology, Emory University, O. Wayne Rollins Research Center, Atlanta, GA, United States
Moran, N., Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States
Nakabachi, A., Advanced Science Institute, Saitama, Japan
Stern, D., Howard Hughes Medical Institute, Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, United States
Tagu, D., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Wilson, A.C.C., Department of Biology, University of Miami, Coral Gables, FL, United States
Muzny, D., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Kovar, C., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Cree, A., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Chacko, J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Chandrabose, M.N., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Dao, M.D., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Dinh, H.H., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Gabisi, R.A., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Hines, S., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Hume, J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Jhangian, S.N., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Joshi, V., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Lewis, L.R., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Liu, Y.-S., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Lopez, J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Morgan, M.B., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Nguyen, N.B., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Okwuonu, G.O., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Ruiz, S.J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Santibanez, J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Wright, R.A., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Fowler, G.R., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Hitchens, M.E., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Lozado, R.J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Moen, C., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Steffen, D., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Warren, J.T., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Zhang, J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Nazareth, L.V., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Chavez, D., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Davis, C., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Lee, S.L., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Patel, B.M., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Pu, L.-L., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Bell, S.N., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Johnson, A.J., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Vattathil, S., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Williams Jr., R.L., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Shigenobu, S., Howard Hughes Medical Institute, Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, United States, PRESTO, JST, 4-1-8 Honcho Kawaguchi, Saitama, 332-0012, Japan, Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Higashiyama, Myodaiji, Okazaki, Japan
Dang, P.M., USDA, ARS, National Peanut Research Laboratory, Dawson, GA, United States
Morioka, M., Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo, Japan
Fukatsu, T., National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
Kudo, T., Discovery Research Institute, Saitama, Japan
Miyagishima, S.-Y., Advanced Science Institute, Saitama, Japan
Jiang, H., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Worley, K.C., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Legeai, F., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Gauthier, J.-P., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Collin, O., CNRS, IRISA, EPI Symbiose, Rennes, France
Zhang, L., Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, United States
Chen, H.-C., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Ermolaeva, O., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Hlavina, W., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Kapustin, Y., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Kiryutin, B., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Kitts, P., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Maglott, D., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Murphy, T., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Pruitt, K., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Sapojnikov, V., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Souvorov, A., USDA, ARS, National Peanut Research Laboratory, Dawson, GA, United States
Thibaud-Nissen, F., National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, United States
Câmara, F., Center de Regulació Genòmica, Universitat Pompeu Fabra, Barcelona, Spain
Guigó, R., Center de Regulació Genòmica, Universitat Pompeu Fabra, Barcelona, Spain, Research Group in Biomedical Informatics, Universitat Pompeu Fabra, Barcelona, Spain, Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Stanke, M., Institut für Mikrobiologie und Genetik, Abteilung für Bioinformatik, Göttingen, Germany
Solovyev, V., Department of Computer Science, Royal Holloway, University of London, Surrey, United Kingdom
Kosarev, P., Softberry Inc., Mount Kisco, NY, United States
Gilbert, D., Department of Biology, Indiana University, Bloomington, IN, United States
Gabaldón, T., Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Huerta-Cepas, J., Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Marcet-Houben, M., Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Pignatelli, M., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, CIBER en Epidemiología y Salud Pública (CIBEResp), Centro Superior de Investigación en Salud Pública (CSISP), Conselleria de Sanidad (Generalitat Valenciana), València, Spain
Moya, A., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, CIBER en Epidemiología y Salud Pública (CIBEResp), Centro Superior de Investigación en Salud Pública (CSISP), Conselleria de Sanidad (Generalitat Valenciana), València, Spain
Rispe, C., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Ollivier, M., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Quesneville, H., Unité de Recherches en Génomique-Info (UR INRA 1164), INRA, Centre de Recherche de Versailles, Versailles Cedex, France
Permal, E., Unité de Recherches en Génomique-Info (UR INRA 1164), INRA, Centre de Recherche de Versailles, Versailles Cedex, France
Llorens, C., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, Biotechvana, Parc Cientific, Universitat de València, València, Spain
Futami, R., Biotechvana, Parc Cientific, Universitat de València, València, Spain
Hedges, D., Miami Institute for Human Genomics, 1120 NW 14th Street, Miami, FL, United States
Robertson, H.M., Department of Entomology, University of Illinois, Urbana-Champaign, IL, United States
Alioto, T., Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Mariotti, M., Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain
Nikoh, N., Division of Natural Sciences, Open University of Japan, Wakaba, Chiba, Japan
McCutcheon, J.P., Center for Insect Science, University of Arizona, Tucson, AZ, United States
Burke, G., Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States
Kamins, A., Department of Biology, Emory University, O. Wayne Rollins Research Center, Atlanta, GA, United States
Latorre, A., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, CIBER en Epidemiología y Salud Pública (CIBEResp), Centro Superior de Investigación en Salud Pública (CSISP), Conselleria de Sanidad (Generalitat Valenciana), València, Spain
Ashton, P., Department of Biology, University of York, York, United Kingdom
Calevro, F., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Charles, H., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Colella, S., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Douglas, A.E., Department of Entomology, Cornell University, Ithaca, NY, United States
Jander, G., Boyce Thompson Institute for Plant Research, Ithaca, NY, United States
Jones, D.H., Department of Biology, University of Miami, Coral Gables, FL, United States
Febvay, G., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Kamphuis, L.G., CSIRO Entomology, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia, CSIRO Plant Industry, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia
Kushlan, P.F., Department of Biology, University of Miami, Coral Gables, FL, United States
Macdonald, S., Department of Biology, University of York, York, United Kingdom
Ramsey, J., Boyce Thompson Institute for Plant Research, Ithaca, NY, United States
Schwartz, J., Department of Biology, University of Miami, Coral Gables, FL, United States
Seah, S., CSIRO Plant Industry, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia
Thomas, G., Department of Biology, University of York, York, United Kingdom
Vellozo, A., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France, Université de Lyon, CNRS, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France
Cass, B., Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States
Degnan, P., Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States
Hurwitz, B., Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States
Leonardo, T., Howard Hughes Medical Institute, Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, United States
Koga, R., National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
Altincicek, B., Interdisciplinary Research Center, Institute of Phytopathology and Applied Zoology, Justus-Liebig-University of Giessen, Giessen, Germany
Anselme, C., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France, UMR Interactions Biotiques et Santé Végétale, INRA 1301, Université de Nice-Sophia Antipolis, Sophia-Antipolis Cedex, France
Atamian, H., Graduate Program in Genetics, Genomics and Bioinformatics, Department of Nematology, University of California, Riverside, CA, United States
Barribeau, S.M., Department of Biology, Emory University, O. Wayne Rollins Research Center, Atlanta, GA, United States
De Vos, M., Boyce Thompson Institute for Plant Research, Ithaca, NY, United States
Duncan, E.J., National Research Centre for Growth and Development, Department of Biochemistry, University of Otago, Dunedin, New Zealand
Evans, J., USDA-ARS, Bee Research Laboratoy, Beltsville, MD, United States
Ghanim, M., Department of Entomology, Volcani Center, Bet Dagan, Israel
Heddi, A., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Kaloshian, I., Graduate Program in Genetics, Genomics and Bioinformatics, Department of Nematology, University of California, Riverside, CA, United States
Vincent-Monegat, C., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Parker, B.J., Department of Biology, Emory University, O. Wayne Rollins Research Center, Atlanta, GA, United States
Pérez-Brocal, V., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Rahbé, Y., UMR203 Biologie Fonctionnelle Insectes et Interactions (BF2I), INSA-Lyon, Université de Lyon, Villeurbanne, France
Spragg, C.J., Department of Biology, Emory University, O. Wayne Rollins Research Center, Atlanta, GA, United States
Tamames, J., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain, CIBER en Epidemiología y Salud Pública (CIBEResp), Centro Superior de Investigación en Salud Pública (CSISP), Conselleria de Sanidad (Generalitat Valenciana), València, Spain
Tamarit, D., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Tamborindeguy, C., Department of Entomology, Texas A and M University, College Station, TX, United States
Vilcinskas, A., Interdisciplinary Research Center, Institute of Phytopathology and Applied Zoology, Justus-Liebig-University of Giessen, Giessen, Germany
Bickel, R.D., Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States
Brisson, J.A., Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States
Butts, T., Department of Zoology, University of Oxford, Oxford, United Kingdom
Chang, C.-C., Department of Entomology, College of Bio-Resources and Agriculture, National Taiwan University, Taipei, Taiwan
Christiaens, O., Lab. Agrozoology, Department Crop Protection, Ghent University, Ghent, Belgium
Davis, G.K., Department of Biology, Bryn Mawr College, Bryn Mawr, PA, United States
Duncan, E., National Research Centre for Growth and Development, Department of Biochemistry, University of Otago, Dunedin, New Zealand
Ferrier, D., Scottish Oceans Institute, University of St. Andrews, St. Andrews, Fife, United Kingdom
Iga, M., Lab. Agrozoology, Department Crop Protection, Ghent University, Ghent, Belgium
Janssen, R., Department of Earth Sciences, Palaeobiology, Uppsala University, Uppsala, Sweden
Lu, H.-L., Department of Entomology, College of Bio-Resources and Agriculture, National Taiwan University, Taipei, Taiwan
McGregor, A., University of Veterinary Medicine Vienna, Institut für Populations-genetik, Veterinärmedizinische Universität Wien, Vienna, Austria
Miura, T., Graduate School of Environmental Science, Hokkaido University, Sapporo, Japan
Smagghe, G., Lab. Agrozoology, Department Crop Protection, Ghent University, Ghent, Belgium
Smith, J., National Research Centre for Growth and Development, Department of Biochemistry, University of Otago, Dunedin, New Zealand
Van Der Zee, M., Institute for Biology, Leiden University, Leiden, Netherlands
Velarde, R., Department of Biology, Wake Forest University, Winston-Salem, NC, United States
Wilson, M., National Research Centre for Growth and Development, Department of Biochemistry, University of Otago, Dunedin, New Zealand
Dearden, P., National Research Centre for Growth and Development, Department of Biochemistry, University of Otago, Dunedin, New Zealand
Edwards, O.R., CSIRO Entomology, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia, Cooperative Research Centre for National Plant Biosecurity, Canberra, ACT, Australia
Gordon, K., CSIRO Entomology, Black Mountain Laboratories, Acton, NSW, Australia
Hilgarth, R.S., Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, United States
Rider Jr., S.D., Department of Pathobiology, Texas A and M University, College Station, TX, United States
Srinivasan, D., Howard Hughes Medical Institute, Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, United States
Walsh, T.K., CSIRO Entomology, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia
Ishikawa, A., Graduate School of Environmental Science, Hokkaido University, Sapporo, Japan
Jaubert-Possamai, S., INRA, UMR BiO3P, Domaine de La Motte, Le Rheu, France
Fenton, B., Plant Pathology, SCRI, Invergowrie and The Scottish Crop Research Institute, Dundee, United Kingdom
Huang, W., Department of Biology, University of Miami, Coral Gables, FL, United States
Rizk, G., Université de Rennes 1, IRISA, EPI Symbiose, Rennes, France
Lavenier, D., ENS Cachan, INRIA, EPI Symbiose, Rennes, France
Nicolas, J., INRIA, IRISA, EPI Symbiose, Rennes, France
Smadja, C., Animal and Plant Sciences Department, University of Sheffield, United Kingdom
Zhou, J.-J., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Vieira, F.G., Departament de Genètica, Universitat de Barcelona, Barcelona, Spain
He, X.-L., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Liu, R., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Rozas, J., Departament de Genètica, Universitat de Barcelona, Barcelona, Spain
Field, L.M., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Campbell, P., CSIRO Entomology, Black Mountain Laboratories, Acton, NSW, Australia
Carolan, J.C., UCD School of Biology and Environmental Science, University College Dublin, Ireland
Fitzroy, C.I.J., UCD School of Biology and Environmental Science, University College Dublin, Ireland
Reardon, K.T., UCD School of Biology and Environmental Science, University College Dublin, Ireland
Reeck, G.R., Cooperative Research Centre for National Plant Biosecurity, Canberra, ACT, Australia, Department of Biochemistry, Kansas State University, Manhattan, KS, United States
Singh, K., CSIRO Plant Industry, Centre for Environment and Life Sciences (CELS), Floreat Park, WA, Australia
Wilkinson, T.L., UCD School of Biology and Environmental Science, University College Dublin, Ireland
Huybrechts, J., Research Group of Functional Genomics and Proteomics, Leuven, Belgium
Abdel-Latief, M., Freie Universität Berlin, Institut für Angewandte Zoologie, Berlin, Germany
Robichon, A., UMR Interactions Biotiques et Santé Végétale, INRA 1301, Université de Nice-Sophia Antipolis, Sophia-Antipolis Cedex, France
Veenstra, J.A., Université de Bordeaux, CNRS, Talence, France
Hauser, F., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Cazzamali, G., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Schneider, M., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Williamson, M., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Stafflinger, E., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Hansen, K.K., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Grimmelikhuijzen, C.J.P., Center for Functional and Comparative Insect Genomics, Department of Biology, University of Copenhagen, Copenhagen, Denmark
Price, D.R.G., School of Biological and Biomedical Sciences, Durham University, Durham, United Kingdom
Caillaud, M., Department of Biology, Ithaca College, Ithaca, NY, United States
Van Fleet, E., Department of Biology, Ithaca College, Ithaca, NY, United States
Ren, Q., J. Craig Venter Institute, Rockville, MD, United States
Gatehouse, J.A., School of Biological and Biomedical Sciences, Durham University, Durham, United Kingdom
Brault, V., INRA UMR SVQV, Equipe Virologie Vection, Colmar, France
Monsion, B., INRA UMR SVQV, Equipe Virologie Vection, Colmar, France
Diaz, J., Department of Biology, Ithaca College, Ithaca, NY, United States
Hunnicutt, L., Genomic Sciences Program, North Carolina State University, Raleigh, NC, United States
Ju, H.-J., Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY, United States
Pechuan, X., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Aguilar, J., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Cortés, T., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Ortiz-Rivas, B., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Martínez-Torres, D., Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universitat de València, València, Spain
Dombrovsky, A., Department of Virology, Volcani Center, Bet Dagan, Israel
Dale, R.P., Syngenta, Jealotts Hill Research Centre, Bracknell, Berkshire, United Kingdom
Davies, T.G.E., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Williamson, M.S., Department of Biological Chemistry, Rothamsted Research, Harpenden, United Kingdom
Jones, A., MRC Functional Genomics Unit, Department of Phisology, Anatomy and Genetics, University of Oxford, Oxford, United Kingdom
Sattelle, D., MRC Functional Genomics Unit, Department of Phisology, Anatomy and Genetics, University of Oxford, Oxford, United Kingdom
Williamson, S., Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom
Wolstenholme, A., Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom
Cottret, L., Université de Lyon, CNRS, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France
Sagot, M.F., Université de Lyon, CNRS, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France
Heckel, D.G., Max Planck Institute for Chemical Ecology, Jena, Germany
Hunter, W., United States Department of Agriculture, Agriculture Research Service, U.S. Horticultural Research Lab., Fort Pierce, FL, United States
Genome sequence of the pea aphid Acyrthosiphon pisum
Aphids are important agricultural pests and also biological models for studies of insect-plant interactions, symbiosis, virus vectoring, and the developmental causes of extreme phenotypic plasticity. Here we present the 464 Mb draft genome assembly of the pea aphid Acyrthosiphon pisum. This first published whole genome sequence of a basal hemimetabolous insect provides an outgroup to the multiple published genomes of holometabolous insects. Pea aphids are host-plant specialists, they can reproduce both sexually and asexually, and they have coevolved with an obligate bacterial symbiont. Here we highlight findings from whole genome analysis that may be related to these unusual biological features. These findings include discovery of extensive gene duplication in more than 2000 gene families as well as loss of evolutionarily conserved genes. Gene family expansions relative to other published genomes include genes involved in chromatin modification, miRNA synthesis, and sugar transport. Gene losses include genes central to the IMD immune pathway, selenoprotein utilization, purine salvage, and the entire urea cycle. The pea aphid genome reveals that only a limited number of genes have been acquired from bacteria; thus the reduced gene count of Buchnera does not reflect gene transfer to the host genome. The inventory of metabolic genes in the pea aphid genome suggests that there is extensive metabolite exchange between the aphid and Buchnera, including sharing of amino acid biosynthesis between the aphid and Buchnera. The pea aphid genome provides a foundation for post-genomic studies of fundamental biological questions and applied agricultural problems.
Scientific Publication
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