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פותח על ידי קלירמאש פתרונות בע"מ -
GeneAnnot: interfacing GeneCards with high-throughput gene expression compendia.
Year:
2003
Source of publication :
Briefings in bioinformatics
Authors :
אופיר, רון
;
.
Volume :
4
Co-Authors:
Chalifa-Caspi, V., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Shmueli, O., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Benjamin-Rodrig, H., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Rosen, N., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Shmoish, M., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Yanai, I., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Ophir, R., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Kats, P., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Safran, M., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Lancet, D., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Facilitators :
From page:
349
To page:
(
Total pages:
-348
)
Abstract:
The interpretation of microarray expression results often includes extensive efforts to identify and annotate the gene representatives immobilised on the arrays. In this paper we describe the usage of our automatic GeneAnnot system, which links between Affymetrix arrays and the rich human gene annotations available in GeneCards. We explain GeneCards search options and results display; elaborate on the presentation of expression information in GeneCards, including both our whole-genome GeneNote project and external expression resources; describe the various parameters and displays used by GeneAnnot to assess the annotation quality and probeset specificity; and show how to search GeneAnnot and GeneNote websites directly.
Note:
Related Files :
article
computer program
Data Interpretation, Statistical
DNA microarray
Oligonucleotide Array Sequence Analysis
Software
statistical analysis
עוד תגיות
תוכן קשור
More details
DOI :
360
Article number:
Affiliations:
Database:
סקופוס
Publication Type:
מאמר
;
.
Language:
אנגלית
Editors' remarks:
ID:
23301
Last updated date:
02/03/2022 17:27
Creation date:
16/04/2018 23:58
Scientific Publication
GeneAnnot: interfacing GeneCards with high-throughput gene expression compendia.
4
Chalifa-Caspi, V., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Shmueli, O., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Benjamin-Rodrig, H., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Rosen, N., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Shmoish, M., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Yanai, I., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Ophir, R., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Kats, P., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Safran, M., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Lancet, D., Bioinformatics Support Unit, Life Sciences Dept., Ben-Gurion University of the Negev, Beer-Sheva, Israel.
GeneAnnot: interfacing GeneCards with high-throughput gene expression compendia.
The interpretation of microarray expression results often includes extensive efforts to identify and annotate the gene representatives immobilised on the arrays. In this paper we describe the usage of our automatic GeneAnnot system, which links between Affymetrix arrays and the rich human gene annotations available in GeneCards. We explain GeneCards search options and results display; elaborate on the presentation of expression information in GeneCards, including both our whole-genome GeneNote project and external expression resources; describe the various parameters and displays used by GeneAnnot to assess the annotation quality and probeset specificity; and show how to search GeneAnnot and GeneNote websites directly.
Scientific Publication
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