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Paterson, A.H., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Wendel, J.F., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Gundlach, H., MIPS/IBIS Institute for Bioinformatics and System Biology, German Research Center for Environmental Health (GmbH), 85764 Neuherberg, Germany
Guo, H., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Jenkins, J., Department of Energy, Joint Genome Institute, Walnut Creek, CA 94595, United States, HudsonAlpha Institute of Biotechnology, Huntsville, AL 35806, United States
Jin, D., Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Llewellyn, D., CSIRO Plant Industry, Canberra, ACT 2601, Australia
Showmaker, K.C., Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, United States
Shu, S., Department of Energy, Joint Genome Institute, Walnut Creek, CA 94595, United States
Udall, J., Plant and Wildlife Science Department, Brigham Young University, Provo, UT 84602, United States
Yoo, M.-J., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Byers, R., Plant and Wildlife Science Department, Brigham Young University, Provo, UT 84602, United States
Chen, W., Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Doron-Faigenboim, A., Department of Field Crops, Plant Sciences Institute, ARO, Bet-Dagan 50250, Israel
Duke, M.V., Jamie Whitten Delta States Research Center, USDA-ARS, Stoneville, MS 38776, United States
Gong, L., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Grimwood, J., Department of Energy, Joint Genome Institute, Walnut Creek, CA 94595, United States, HudsonAlpha Institute of Biotechnology, Huntsville, AL 35806, United States
Grover, C., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Grupp, K., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Hu, G., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Lee, T.-H., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Li, J., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Lin, L., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Liu, T., Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Marler, B.S., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Page, J.T., Plant and Wildlife Science Department, Brigham Young University, Provo, UT 84602, United States
Roberts, A.W., Department of Biological Sciences, University of Rhode Island, Kingston, RI 02881, United States
Romanel, E., Departamento de Genética, Universidade Federal Do Rio de Janeiro (UFRJ), Rio de Janeiro, 21941-901, Brazil
Sanders, W.S., Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, United States
Szadkowski, E., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Tan, X., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Tang, H., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States, J. Craig Venter Institute, Rockville, MD 20850, United States
Xu, C., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States, Key Laboratory of Molecular Epigenetics of MOE, Unit of Plant Epigenetics, Northeast Normal University, Renmin Street, 5268 Changchun, China
Wang, J., Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Wang, Z., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Zhang, D., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Zhang, L., Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Ashrafi, H., Plant Reproductive Biology Extension Center, University of California, Davis, CA 95616, United States
Bedon, F., CSIRO Plant Industry, Canberra, ACT 2601, Australia
Bowers, J.E., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Brubaker, C.L., CSIRO Plant Industry, Canberra, ACT 2601, Australia, Bayer CropScience, Technologiepark 38, 9052 Gent, Belgium
Chee, P.W., Coastal Plain Experiment Station, University of Georgia, Tifton, GA 31793, United States
Das, S., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Gingle, A.R., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Haigler, C.H., Departments of Crop Science and Plant Biology, North Carolina State University, Raleigh, NC 27695, United States
Harker, D., Plant and Wildlife Science Department, Brigham Young University, Provo, UT 84602, United States
Hoffmann, L.V., Centro Nacional de Pesquisa em Algodão, EMBRAPA, Santo Antônio de Góias, GO 75375-000, Brazil
Hovav, R., Department of Field Crops, Plant Sciences Institute, ARO, Bet-Dagan 50250, Israel
Jones, D.C., Cotton Incorporated, Cary, NC 27513, United States
Lemke, C., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Mansoor, S., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States, National Institute for Biotechnology and Genetic Engineering, Faisalabad 38000, Pakistan
Rahman, M.U., National Institute for Biotechnology and Genetic Engineering, Faisalabad 38000, Pakistan
Rainville, L.N., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Rambani, A., Plant and Wildlife Science Department, Brigham Young University, Provo, UT 84602, United States
Reddy, U.K., Department of Biology, West Virginia State University, WV 25112, United States
Rong, J.-K., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Saranga, Y., Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Hebrew University of Jerusalem, Rehovot 76100, Israel
Scheffler, B.E., Jamie Whitten Delta States Research Center, USDA-ARS, Stoneville, MS 38776, United States
Scheffler, J.A., Jamie Whitten Delta States Research Center, USDA-ARS, Stoneville, MS 38776, United States
Stelly, D.M., Department of Soil and Crop Science, Texas A and M University, College Station, TX 77843, United States
Triplett, B.A., Cotton Fiber Bioscience Research, USDA-ARS, New Orleans, LA 70124, United States
Van Deynze, A., Plant Reproductive Biology Extension Center, University of California, Davis, CA 95616, United States
Vaslin, M.F.S., Departamento de Microbiologia, Universidade Federal Do Rio de Janeiro (UFRJ), Rio de Janeiro 21941-971, Brazil
Waghmare, V.N., Central Institute for Cotton Research, Nagpur, 440010 Maharashtra, India
Walford, S.A., CSIRO Plant Industry, Canberra, ACT 2601, Australia
Wright, R.J., Department of Plant Sciences, Texas Tech University, Lubbock, TX 79415, United States
Zaki, E.A., Nucleic Acids Department, Genetic Engineering and Biotechnology Research Institute, 21934 Alexandria, Egypt
Zhang, T., Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095 Jiangsu, China
Dennis, E.S., CSIRO Plant Industry, Canberra, ACT 2601, Australia
Mayer, K.F.X., MIPS/IBIS Institute for Bioinformatics and System Biology, German Research Center for Environmental Health (GmbH), 85764 Neuherberg, Germany
Peterson, D.G., Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, United States
Rokhsar, D.S., Department of Energy, Joint Genome Institute, Walnut Creek, CA 94595, United States
Wang, X., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States, Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Schmutz, J., Department of Energy, Joint Genome Institute, Walnut Creek, CA 94595, United States, HudsonAlpha Institute of Biotechnology, Huntsville, AL 35806, United States
Polyploidy often confers emergent properties, such as the higher fibre productivity and quality of tetraploid cottons than diploid cottons bred for the same environments. Here we show that an abrupt five-to sixfold ploidy increase approximately 60million years (Myr) ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1-2 Myr ago, conferred about 30-36-fold duplication of ancestral angiosperm (flowering plant) genes in elite cottons (Gossypium hirsutum and Gossypium barbadense), genetic complexity equalled only by Brassica among sequenced angiosperms. Nascent fibre evolution, before allopolyploidy, is elucidated by comparison of spinnable-fibred Gossypium herbaceum A and non-spinnable Gossypium longicalyx F genomes to one another and the outgroup D genome of non-spinnable Gossypium raimondii. The sequence of a G. hirsutum A t D t (in which t' indicates tetraploid) cultivar reveals many non-reciprocal DNA exchanges between subgenomes that may have contributed to phenotypic innovation and/or other emergent properties such as ecological adaptation by polyploids. Most DNA-level novelty in G. hirsutum recombines alleles from the D-genome progenitor native to its New World habitat and the Old World A-genome progenitor in which spinnable fibre evolved. Coordinated expression changes in proximal groups of functionally distinct genes, including a nuclear mitochondrial DNA block, may account for clusters of cotton-fibre quantitative trait loci affecting diverse traits. Opportunities abound for dissecting emergent properties of other polyploids, particularly angiosperms, by comparison to diploid progenitors and outgroups. © 2012 Macmillan Publishers Limited. All rights reserved.
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תנאי שימוש
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
492
Paterson, A.H., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Wendel, J.F., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Gundlach, H., MIPS/IBIS Institute for Bioinformatics and System Biology, German Research Center for Environmental Health (GmbH), 85764 Neuherberg, Germany
Guo, H., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Jenkins, J., Department of Energy, Joint Genome Institute, Walnut Creek, CA 94595, United States, HudsonAlpha Institute of Biotechnology, Huntsville, AL 35806, United States
Jin, D., Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Llewellyn, D., CSIRO Plant Industry, Canberra, ACT 2601, Australia
Showmaker, K.C., Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, United States
Shu, S., Department of Energy, Joint Genome Institute, Walnut Creek, CA 94595, United States
Udall, J., Plant and Wildlife Science Department, Brigham Young University, Provo, UT 84602, United States
Yoo, M.-J., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Byers, R., Plant and Wildlife Science Department, Brigham Young University, Provo, UT 84602, United States
Chen, W., Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Doron-Faigenboim, A., Department of Field Crops, Plant Sciences Institute, ARO, Bet-Dagan 50250, Israel
Duke, M.V., Jamie Whitten Delta States Research Center, USDA-ARS, Stoneville, MS 38776, United States
Gong, L., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Grimwood, J., Department of Energy, Joint Genome Institute, Walnut Creek, CA 94595, United States, HudsonAlpha Institute of Biotechnology, Huntsville, AL 35806, United States
Grover, C., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Grupp, K., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Hu, G., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Lee, T.-H., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Li, J., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Lin, L., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Liu, T., Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Marler, B.S., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Page, J.T., Plant and Wildlife Science Department, Brigham Young University, Provo, UT 84602, United States
Roberts, A.W., Department of Biological Sciences, University of Rhode Island, Kingston, RI 02881, United States
Romanel, E., Departamento de Genética, Universidade Federal Do Rio de Janeiro (UFRJ), Rio de Janeiro, 21941-901, Brazil
Sanders, W.S., Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, United States
Szadkowski, E., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States
Tan, X., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Tang, H., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States, J. Craig Venter Institute, Rockville, MD 20850, United States
Xu, C., Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, United States, Key Laboratory of Molecular Epigenetics of MOE, Unit of Plant Epigenetics, Northeast Normal University, Renmin Street, 5268 Changchun, China
Wang, J., Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Wang, Z., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Zhang, D., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Zhang, L., Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Ashrafi, H., Plant Reproductive Biology Extension Center, University of California, Davis, CA 95616, United States
Bedon, F., CSIRO Plant Industry, Canberra, ACT 2601, Australia
Bowers, J.E., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Brubaker, C.L., CSIRO Plant Industry, Canberra, ACT 2601, Australia, Bayer CropScience, Technologiepark 38, 9052 Gent, Belgium
Chee, P.W., Coastal Plain Experiment Station, University of Georgia, Tifton, GA 31793, United States
Das, S., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Gingle, A.R., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Haigler, C.H., Departments of Crop Science and Plant Biology, North Carolina State University, Raleigh, NC 27695, United States
Harker, D., Plant and Wildlife Science Department, Brigham Young University, Provo, UT 84602, United States
Hoffmann, L.V., Centro Nacional de Pesquisa em Algodão, EMBRAPA, Santo Antônio de Góias, GO 75375-000, Brazil
Hovav, R., Department of Field Crops, Plant Sciences Institute, ARO, Bet-Dagan 50250, Israel
Jones, D.C., Cotton Incorporated, Cary, NC 27513, United States
Lemke, C., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Mansoor, S., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States, National Institute for Biotechnology and Genetic Engineering, Faisalabad 38000, Pakistan
Rahman, M.U., National Institute for Biotechnology and Genetic Engineering, Faisalabad 38000, Pakistan
Rainville, L.N., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Rambani, A., Plant and Wildlife Science Department, Brigham Young University, Provo, UT 84602, United States
Reddy, U.K., Department of Biology, West Virginia State University, WV 25112, United States
Rong, J.-K., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States
Saranga, Y., Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Hebrew University of Jerusalem, Rehovot 76100, Israel
Scheffler, B.E., Jamie Whitten Delta States Research Center, USDA-ARS, Stoneville, MS 38776, United States
Scheffler, J.A., Jamie Whitten Delta States Research Center, USDA-ARS, Stoneville, MS 38776, United States
Stelly, D.M., Department of Soil and Crop Science, Texas A and M University, College Station, TX 77843, United States
Triplett, B.A., Cotton Fiber Bioscience Research, USDA-ARS, New Orleans, LA 70124, United States
Van Deynze, A., Plant Reproductive Biology Extension Center, University of California, Davis, CA 95616, United States
Vaslin, M.F.S., Departamento de Microbiologia, Universidade Federal Do Rio de Janeiro (UFRJ), Rio de Janeiro 21941-971, Brazil
Waghmare, V.N., Central Institute for Cotton Research, Nagpur, 440010 Maharashtra, India
Walford, S.A., CSIRO Plant Industry, Canberra, ACT 2601, Australia
Wright, R.J., Department of Plant Sciences, Texas Tech University, Lubbock, TX 79415, United States
Zaki, E.A., Nucleic Acids Department, Genetic Engineering and Biotechnology Research Institute, 21934 Alexandria, Egypt
Zhang, T., Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095 Jiangsu, China
Dennis, E.S., CSIRO Plant Industry, Canberra, ACT 2601, Australia
Mayer, K.F.X., MIPS/IBIS Institute for Bioinformatics and System Biology, German Research Center for Environmental Health (GmbH), 85764 Neuherberg, Germany
Peterson, D.G., Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, United States
Rokhsar, D.S., Department of Energy, Joint Genome Institute, Walnut Creek, CA 94595, United States
Wang, X., Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, United States, Center for Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China
Schmutz, J., Department of Energy, Joint Genome Institute, Walnut Creek, CA 94595, United States, HudsonAlpha Institute of Biotechnology, Huntsville, AL 35806, United States
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
Polyploidy often confers emergent properties, such as the higher fibre productivity and quality of tetraploid cottons than diploid cottons bred for the same environments. Here we show that an abrupt five-to sixfold ploidy increase approximately 60million years (Myr) ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1-2 Myr ago, conferred about 30-36-fold duplication of ancestral angiosperm (flowering plant) genes in elite cottons (Gossypium hirsutum and Gossypium barbadense), genetic complexity equalled only by Brassica among sequenced angiosperms. Nascent fibre evolution, before allopolyploidy, is elucidated by comparison of spinnable-fibred Gossypium herbaceum A and non-spinnable Gossypium longicalyx F genomes to one another and the outgroup D genome of non-spinnable Gossypium raimondii. The sequence of a G. hirsutum A t D t (in which t' indicates tetraploid) cultivar reveals many non-reciprocal DNA exchanges between subgenomes that may have contributed to phenotypic innovation and/or other emergent properties such as ecological adaptation by polyploids. Most DNA-level novelty in G. hirsutum recombines alleles from the D-genome progenitor native to its New World habitat and the Old World A-genome progenitor in which spinnable fibre evolved. Coordinated expression changes in proximal groups of functionally distinct genes, including a nuclear mitochondrial DNA block, may account for clusters of cotton-fibre quantitative trait loci affecting diverse traits. Opportunities abound for dissecting emergent properties of other polyploids, particularly angiosperms, by comparison to diploid progenitors and outgroups. © 2012 Macmillan Publishers Limited. All rights reserved.
Scientific Publication
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