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Development of microsatellite markers in potato and their use in phylogenetic and fingerprinting analyses
Year:
2001
Source of publication :
Genome
Authors :
Lavi, Uri
;
.
Volume :
44
Co-Authors:
Ashkenazi, V., Department of Genetics, Hebrew University of Jerusalem, Rehovot, Israel
Chani, E., Department of Horticulture, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, United States
Lavi, U., Department of Horticultural Genetics, Agricultural Research Organization/Volcani Center, Bet Dagan, Israel
Levy, D., Department of Field Crops, ARO/Volcani Center, Bet Dagan, Israel
Hillel, J., Department of Genetics, Hebrew University of Jerusalem, Rehovot, Israel
Veilleux, R.E., Department of Horticulture, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, United States
Facilitators :
From page:
50
To page:
62
(
Total pages:
13
)
Abstract:
Three genomic libraries were constructed using a mixture of DNA from Solanum phureja Juz. & Buk., and S. chacoense Bitt. Two of the libraries were enriched for ATT and GT repeats (a 27-fold enrichment was achieved). In total, 3500 clones of the conventional library, 1000 of the library enriched for ATT, and 12 000 of the one enriched for GT were screened with five different repeat motifs, and a total of 18 primer pairs was obtained. Another group of 12 primer pairs was obtained from the SSR-containing sequences in the public databases (18 SSR-containing sequences were utilized). From among 30 newly developed primer pairs, 12 previously published ones, and 12 pairs developed for tomato, 7 were used to identify 12 different potato cultivars and introductions, and 12 were used to study phylogenetic distance among seven wild and cultivated potato species. Two SSR markers were sufficient to discriminate the 12 cultivars. The mean number of alleles per polymorphic locus was 5 for the 12 cultivars and 4.5 for the seven species. The results obtained in this study confirm those achieved in similar studies in other plant species regarding the abundance and use of SSR markers in identifying species and cultivars.
Note:
Related Files :
Base Sequence
Genetic distance
genetic markers
plant DNA
simple sequence repeat
Solanum
Solanum tuberosum
Show More
Related Content
More details
DOI :
10.1139/gen-44-1-50
Article number:
0
Affiliations:
Database:
Scopus
Publication Type:
article
;
.
Language:
English
Editors' remarks:
ID:
18428
Last updated date:
02/03/2022 17:27
Creation date:
16/04/2018 23:21
Scientific Publication
Development of microsatellite markers in potato and their use in phylogenetic and fingerprinting analyses
44
Ashkenazi, V., Department of Genetics, Hebrew University of Jerusalem, Rehovot, Israel
Chani, E., Department of Horticulture, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, United States
Lavi, U., Department of Horticultural Genetics, Agricultural Research Organization/Volcani Center, Bet Dagan, Israel
Levy, D., Department of Field Crops, ARO/Volcani Center, Bet Dagan, Israel
Hillel, J., Department of Genetics, Hebrew University of Jerusalem, Rehovot, Israel
Veilleux, R.E., Department of Horticulture, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, United States
Development of microsatellite markers in potato and their use in phylogenetic and fingerprinting analyses
Three genomic libraries were constructed using a mixture of DNA from Solanum phureja Juz. & Buk., and S. chacoense Bitt. Two of the libraries were enriched for ATT and GT repeats (a 27-fold enrichment was achieved). In total, 3500 clones of the conventional library, 1000 of the library enriched for ATT, and 12 000 of the one enriched for GT were screened with five different repeat motifs, and a total of 18 primer pairs was obtained. Another group of 12 primer pairs was obtained from the SSR-containing sequences in the public databases (18 SSR-containing sequences were utilized). From among 30 newly developed primer pairs, 12 previously published ones, and 12 pairs developed for tomato, 7 were used to identify 12 different potato cultivars and introductions, and 12 were used to study phylogenetic distance among seven wild and cultivated potato species. Two SSR markers were sufficient to discriminate the 12 cultivars. The mean number of alleles per polymorphic locus was 5 for the 12 cultivars and 4.5 for the seven species. The results obtained in this study confirm those achieved in similar studies in other plant species regarding the abundance and use of SSR markers in identifying species and cultivars.
Scientific Publication
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