אסיף מאגר המחקר החקלאי

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

Year:

2012

Source of publication :

Authors :

Volume :

44

Co-Authors:

O'Connell, R.J., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany
Thon, M.R., Centro Hispano-Luso de Investigaciones Agrarias, Departamento de Microbiología y Genética, Universidad de Salamanca, Villamayor, Spain
Hacquard, S., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany
Amyotte, S.G., Department of Plant Pathology, University of Kentucky, Lexington, KY, United States
Kleemann, J., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany
Torres, M.F., Department of Plant Pathology, University of Kentucky, Lexington, KY, United States
Damm, U., Centraalbureau voor Schimmelcultures, Koninklijke Nederlandse Akademie Van Wetenschappen, Fungal Biodiversity Centre, Utrecht, Netherlands
Buiate, E.A., Department of Plant Pathology, University of Kentucky, Lexington, KY, United States
Epstein, L., Department of Plant Pathology, University of California, Davis, CA, United States
Alkan, N., Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, Volcani Center, Bet Dagan, Israel
Altmüller, J., Cologne Center for Genomics, University of Cologne, Cologne, Germany
Alvarado-Balderrama, L., Broad Institute, Cambridge, MA, United States
Bauser, C.A., GATC Biotech AG, Konstanz, Germany
Becker, C., Cologne Center for Genomics, University of Cologne, Cologne, Germany
Birren, B.W., Broad Institute, Cambridge, MA, United States
Chen, Z., Broad Institute, Cambridge, MA, United States
Choi, J., Department of Agricultural Biotechnology, Center for Fungal Genetic Resources, Seoul National University, Seoul, South Korea
Crouch, J.A., Systematic Mycology and Microbiology Laboratory, US Department of Agriculture, Agricultural Research Service, Beltsville, MD, United States
Duvick, J.P., Pioneer Hi-Bred International, DuPont Agricultural Biotechnology, Wilmington, DE, United States, Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, United States
Farman, M.A., Department of Plant Pathology, University of Kentucky, Lexington, KY, United States
Gan, P., Plant Immunity Research Group, RIKEN Plant Science Center, Yokohama, Japan
Heiman, D., Broad Institute, Cambridge, MA, United States
Henrissat, B., Laboratoire Architecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7257, Marseille, France
Howard, R.J., Pioneer Hi-Bred International, DuPont Agricultural Biotechnology, Wilmington, DE, United States
Kabbage, M., Department of Plant Pathology and Microbiology, Institute for Plant Genomics and Biotechnology, Texas A and M University, College Station, TX, United States
Koch, C., Department of Biology, Division of Biochemistry, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen, Germany
Kracher, B., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany
Kubo, Y., Laboratory of Plant Pathology, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
Law, A.D., Department of Plant Pathology, University of Kentucky, Lexington, KY, United States
Lebrun, M.-H., Institut National de la Recherche Agronomique, Biologie et Gestion des Risques en Agriculture-Champignons Pathogènes des Plantes, Thiverval-Grignon, France
Lee, Y.-H., Department of Agricultural Biotechnology, Center for Fungal Genetic Resources, Seoul National University, Seoul, South Korea
Miyara, I., Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, Volcani Center, Bet Dagan, Israel
Moore, N., Department of Computer Science, University of Kentucky, Lexington, KY, United States
Neumann, U., Central Microscopy, Max Planck Institute for Plant Breeding Research, Cologne, Germany
Nordström, K., Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Cologne, Germany
Panaccione, D.G., Division of Plant and Soil Sciences, West Virginia University, Morgantown, WV, United States
Panstruga, R., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany, Institute for Biology i, Unit of Plant Molecular Cell Biology, Rheinisch-Westfälische Technische Hochschule Aachen University, Aachen, Germany
Place, M., Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison, Madison, WI, United States
Proctor, R.H., US Department of Agriculture, Agriculture Research Service, National Center for Agricultural Utilization Research, Peoria, IL, United States
Prusky, D., Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, Volcani Center, Bet Dagan, Israel
Rech, G., Centro Hispano-Luso de Investigaciones Agrarias, Departamento de Microbiología y Genética, Universidad de Salamanca, Villamayor, Spain
Reinhardt, R., Max Planck Genome Centre Cologne, Cologne, Germany
Rollins, J.A., Department of Plant Pathology, University of Florida, Gainesville, FL, United States
Rounsley, S., Broad Institute, Cambridge, MA, United States
Schardl, C.L., Department of Plant Pathology, University of Kentucky, Lexington, KY, United States
Schwartz, D.C., Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison, Madison, WI, United States
Shenoy, N., Broad Institute, Cambridge, MA, United States
Shirasu, K., Plant Immunity Research Group, RIKEN Plant Science Center, Yokohama, Japan
Sikhakolli, U.R., Department of Plant Biology, Michigan State University, East Lansing, MI, United States
Stüber, K., Max Planck Genome Centre Cologne, Cologne, Germany
Sukno, S.A., Centro Hispano-Luso de Investigaciones Agrarias, Departamento de Microbiología y Genética, Universidad de Salamanca, Villamayor, Spain
Sweigard, J.A., Pioneer Hi-Bred International, DuPont Agricultural Biotechnology, Wilmington, DE, United States
Takano, Y., Laboratory of Plant Pathology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
Takahara, H., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany, Department of Bioproduction Science, Faculty of Bioresources and Environmental Sciences, Ishikawa Prefectural University, Ishikawa, Japan
Trail, F., Department of Plant Biology, Michigan State University, East Lansing, MI, United States
Van Der Does, H.C., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany, Department of Plant Pathology, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands
Voll, L.M., Department of Biology, Division of Biochemistry, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen, Germany
Will, I., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany
Young, S., Broad Institute, Cambridge, MA, United States
Zeng, Q., Broad Institute, Cambridge, MA, United States
Zhang, J., Broad Institute, Cambridge, MA, United States
Zhou, S., Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison, Madison, WI, United States
Dickman, M.B., Department of Plant Pathology and Microbiology, Institute for Plant Genomics and Biotechnology, Texas A and M University, College Station, TX, United States
Schulze-Lefert, P., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany
Ver Loren Van Themaat, E., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany
Ma, L.-J., Broad Institute, Cambridge, MA, United States, College of Natural Sciences, University of Massachusetts Amherst, Amherst, MA, United States
Vaillancourt, L.J., Department of Plant Pathology, University of Kentucky, Lexington, KY, United States

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Abstract:

Colletotrichum species are fungal pathogens that devastate crop plants worldwide. Host infection involves the differentiation of specialized cell types that are associated with penetration, growth inside living host cells (biotrophy) and tissue destruction (necrotrophy). We report here genome and transcriptome analyses of Colletotrichum higginsianum infecting Arabidopsis thaliana and Colletotrichum graminicola infecting maize. Comparative genomics showed that both fungi have large sets of pathogenicity-related genes, but families of genes encoding secreted effectors, pectin-degrading enzymes, secondary metabolism enzymes, transporters and peptidases are expanded in C. higginsianum. Genome-wide expression profiling revealed that these genes are transcribed in successive waves that are linked to pathogenic transitions: effectors and secondary metabolism enzymes are induced before penetration and during biotrophy, whereas most hydrolases and transporters are upregulated later, at the switch to necrotrophy. Our findings show that preinvasion perception of plant-derived signals substantially reprograms fungal gene expression and indicate previously unknown functions for particular fungal cell types. © 2012 Nature America, Inc. All rights reserved.

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