נגישות
menu      
Advanced Search
Syntax
Search...
Volcani treasures
About
Terms of use
Manage
Community:
אסיף מאגר המחקר החקלאי
Powered by ClearMash Solutions Ltd -
A consensus linkage map for molecular markers and Quantitative Trait Loci associated with economically important traits in melon (Cucumis melo L.)
Year:
2011
Source of publication :
BMC Plant Biology
Authors :
Cohen, Shahar
;
.
Harel-Beja, Rotem
;
.
Katzir, Nurit
;
.
Portnoy, Vitaly H.
;
.
Schaffer, Arthur
;
.
Tzuri, Galil
;
.
Volume :
11
Co-Authors:
Diaz, A., Instituto de Biología Molecular y Celular de Plantas (IBMCP), Universidad Politécnica de Valencia (UPV), Consejo Superior de Investigaciones Cientificas (CSIC), Ciudad Politecnica de la Innovacion (CPI), Ed. 8E. C/Ingeniero Fausto Elio s/n, 46022 Valencia, Spain
Fergany, M., IRTA, Center for Research in Agricultural Genomics (CSIC-IRTA-UAB), Campus UAB, Edifici CRAG, 08193 Bellaterra (Barcelona), Spain, Agronomy Department Faculty of Agriculture, Ain Shams University, Cairo, Egypt
Formisano, G., Department of Soil, Plant, Environmental and Animal Production Sciences, Federico II University of Naples, Via Università 100, 80055 Portici, Italy
Ziarsolo, P., COMAV-UPV, Institute for the Conservation and Breeding of Agricultural Biodiversity, Universidad Politécnica de Valencia, Camino de Vera s/n, 46022 Valencia, Spain
Blanca, J., COMAV-UPV, Institute for the Conservation and Breeding of Agricultural Biodiversity, Universidad Politécnica de Valencia, Camino de Vera s/n, 46022 Valencia, Spain
Fei, Z., Boyce Thompson Institute for Plant Research, Ithaca, NY 14853, United States
Staub, J.E., USDA-ARS, Vegetable Crops Research Unit, Department of Horticulture, University of Wisconsin, 1575 Linden Dr, Madison, WI 53706, United States, USDA-ARS, Forage and Range Research Laboratory, Utah State University, Logan, UT 84322-6300, United States
Zalapa, J.E., USDA-ARS, Vegetable Crops Research Unit, Department of Horticulture, University of Wisconsin, 1575 Linden Dr, Madison, WI 53706, United States
Cuevas, H.E., USDA-ARS, Vegetable Crops Research Unit, Department of Horticulture, University of Wisconsin, 1575 Linden Dr, Madison, WI 53706, United States, USDA-ARS, Tropical Agricultural Research Station, 2200 Pedro Albizu Campus Ave, Mayaguez 00680-5470, Puerto Rico
Dace, G., Syngenta Biotechnology, Inc., Research Triangle Park, NC 27709, United States
Oliver, M., Syngenta Seeds, 12 chemin de l'Hobit, F-31790 Saint-Sauveur, France
Boissot, N., INRA, UR 1052, Unité de Génétique et d'Amélioration des Fruits et Légumes, Domaine St Maurice, BP 94, 84143 Montfavet Cedex, France
Dogimont, C., INRA, UR 1052, Unité de Génétique et d'Amélioration des Fruits et Légumes, Domaine St Maurice, BP 94, 84143 Montfavet Cedex, France
Pitrat, M., INRA, UR 1052, Unité de Génétique et d'Amélioration des Fruits et Légumes, Domaine St Maurice, BP 94, 84143 Montfavet Cedex, France
Hofstede, R., Keygene N.V., P.O. Box 216, 6700 AE Wageningen, Netherlands
van Koert, P., Keygene N.V., P.O. Box 216, 6700 AE Wageningen, Netherlands
Harel-Beja, R., Institute of Plant Science, Agricultural Research Organization (ARO), Newe Ya'ar Research Center, Ramat Yishay 30095, Israel
Tzuri, G., Institute of Plant Science, Agricultural Research Organization (ARO), Newe Ya'ar Research Center, Ramat Yishay 30095, Israel
Portnoy, V., Institute of Plant Science, Agricultural Research Organization (ARO), Newe Ya'ar Research Center, Ramat Yishay 30095, Israel
Cohen, S., Institute of Plant Science, Agricultural Research Organization, Volcani Research Center, Bet Dagan 50250, Israel
Schaffer, A., Institute of Plant Science, Agricultural Research Organization, Volcani Research Center, Bet Dagan 50250, Israel
Katzir, N., Institute of Plant Science, Agricultural Research Organization (ARO), Newe Ya'ar Research Center, Ramat Yishay 30095, Israel
Xu, Y., National Engineering Research Center for Vegetables (NERCV), Beijing Academy Agricultural and Forestry Science, Beijing 100097, China
Zhang, H., National Engineering Research Center for Vegetables (NERCV), Beijing Academy Agricultural and Forestry Science, Beijing 100097, China
Fukino, N., National Institute of Vegetable and Tea Science (NIVTS), 360 Kusawa, Ano, Tsu, Mie, 514-2392, Japan
Matsumoto, S., National Institute of Vegetable and Tea Science (NIVTS), 360 Kusawa, Ano, Tsu, Mie, 514-2392, Japan
Garcia-Mas, J., IRTA, Center for Research in Agricultural Genomics (CSIC-IRTA-UAB), Campus UAB, Edifici CRAG, 08193 Bellaterra (Barcelona), Spain
Monforte, A.J., Instituto de Biología Molecular y Celular de Plantas (IBMCP), Universidad Politécnica de Valencia (UPV), Consejo Superior de Investigaciones Cientificas (CSIC), Ciudad Politecnica de la Innovacion (CPI), Ed. 8E. C/Ingeniero Fausto Elio s/n, 46022 Valencia, Spain, IRTA, Center for Research in Agricultural Genomics (CSIC-IRTA-UAB), Campus UAB, Edifici CRAG, 08193 Bellaterra (Barcelona), Spain
Facilitators :
From page:
To page:
(
Total pages:
1
)
Abstract:
Background: A number of molecular marker linkage maps have been developed for melon (Cucumis melo L.) over the last two decades. However, these maps were constructed using different marker sets, thus, making comparative analysis among maps difficult. In order to solve this problem, a consensus genetic map in melon was constructed using primarily highly transferable anchor markers that have broad potential use for mapping, synteny, and comparative quantitative trait loci (QTL) analysis, increasing breeding effectiveness and efficiency via marker-assisted selection (MAS).Results: Under the framework of the International Cucurbit Genomics Initiative (ICuGI, http://www.icugi.org), an integrated genetic map has been constructed by merging data from eight independent mapping experiments using a genetically diverse array of parental lines. The consensus map spans 1150 cM across the 12 melon linkage groups and is composed of 1592 markers (640 SSRs, 330 SNPs, 252 AFLPs, 239 RFLPs, 89 RAPDs, 15 IMAs, 16 indels and 11 morphological traits) with a mean marker density of 0.72 cM/marker. One hundred and ninety-six of these markers (157 SSRs, 32 SNPs, 6 indels and 1 RAPD) were newly developed, mapped or provided by industry representatives as released markers, including 27 SNPs and 5 indels from genes involved in the organic acid metabolism and transport, and 58 EST-SSRs. Additionally, 85 of 822 SSR markers contributed by Syngenta Seeds were included in the integrated map. In addition, 370 QTL controlling 62 traits from 18 previously reported mapping experiments using genetically diverse parental genotypes were also integrated into the consensus map. Some QTL associated with economically important traits detected in separate studies mapped to similar genomic positions. For example, independently identified QTL controlling fruit shape were mapped on similar genomic positions, suggesting that such QTL are possibly responsible for the phenotypic variability observed for this trait in a broad array of melon germplasm.Conclusions: Even though relatively unsaturated genetic maps in a diverse set of melon market types have been published, the integrated saturated map presented herein should be considered the initial reference map for melon. Most of the mapped markers contained in the reference map are polymorphic in diverse collection of germplasm, and thus are potentially transferrable to a broad array of genetic experimentation (e.g., integration of physical and genetic maps, colinearity analysis, map-based gene cloning, epistasis dissection, and marker-assisted selection). © 2011 Diaz et al; licensee BioMed Central Ltd.
Note:
Related Files :
chromosome map
chromosome mapping
crop
Cucumis melo
genetic linkage
genetic markers
Genetics
Plant Genome
Show More
Related Content
More details
DOI :
10.1186/1471-2229-11-111
Article number:
111
Affiliations:
Database:
Scopus
Publication Type:
article
;
.
Language:
English
Editors' remarks:
ID:
30911
Last updated date:
02/03/2022 17:27
Creation date:
17/04/2018 00:58
Scientific Publication
A consensus linkage map for molecular markers and Quantitative Trait Loci associated with economically important traits in melon (Cucumis melo L.)
11
Diaz, A., Instituto de Biología Molecular y Celular de Plantas (IBMCP), Universidad Politécnica de Valencia (UPV), Consejo Superior de Investigaciones Cientificas (CSIC), Ciudad Politecnica de la Innovacion (CPI), Ed. 8E. C/Ingeniero Fausto Elio s/n, 46022 Valencia, Spain
Fergany, M., IRTA, Center for Research in Agricultural Genomics (CSIC-IRTA-UAB), Campus UAB, Edifici CRAG, 08193 Bellaterra (Barcelona), Spain, Agronomy Department Faculty of Agriculture, Ain Shams University, Cairo, Egypt
Formisano, G., Department of Soil, Plant, Environmental and Animal Production Sciences, Federico II University of Naples, Via Università 100, 80055 Portici, Italy
Ziarsolo, P., COMAV-UPV, Institute for the Conservation and Breeding of Agricultural Biodiversity, Universidad Politécnica de Valencia, Camino de Vera s/n, 46022 Valencia, Spain
Blanca, J., COMAV-UPV, Institute for the Conservation and Breeding of Agricultural Biodiversity, Universidad Politécnica de Valencia, Camino de Vera s/n, 46022 Valencia, Spain
Fei, Z., Boyce Thompson Institute for Plant Research, Ithaca, NY 14853, United States
Staub, J.E., USDA-ARS, Vegetable Crops Research Unit, Department of Horticulture, University of Wisconsin, 1575 Linden Dr, Madison, WI 53706, United States, USDA-ARS, Forage and Range Research Laboratory, Utah State University, Logan, UT 84322-6300, United States
Zalapa, J.E., USDA-ARS, Vegetable Crops Research Unit, Department of Horticulture, University of Wisconsin, 1575 Linden Dr, Madison, WI 53706, United States
Cuevas, H.E., USDA-ARS, Vegetable Crops Research Unit, Department of Horticulture, University of Wisconsin, 1575 Linden Dr, Madison, WI 53706, United States, USDA-ARS, Tropical Agricultural Research Station, 2200 Pedro Albizu Campus Ave, Mayaguez 00680-5470, Puerto Rico
Dace, G., Syngenta Biotechnology, Inc., Research Triangle Park, NC 27709, United States
Oliver, M., Syngenta Seeds, 12 chemin de l'Hobit, F-31790 Saint-Sauveur, France
Boissot, N., INRA, UR 1052, Unité de Génétique et d'Amélioration des Fruits et Légumes, Domaine St Maurice, BP 94, 84143 Montfavet Cedex, France
Dogimont, C., INRA, UR 1052, Unité de Génétique et d'Amélioration des Fruits et Légumes, Domaine St Maurice, BP 94, 84143 Montfavet Cedex, France
Pitrat, M., INRA, UR 1052, Unité de Génétique et d'Amélioration des Fruits et Légumes, Domaine St Maurice, BP 94, 84143 Montfavet Cedex, France
Hofstede, R., Keygene N.V., P.O. Box 216, 6700 AE Wageningen, Netherlands
van Koert, P., Keygene N.V., P.O. Box 216, 6700 AE Wageningen, Netherlands
Harel-Beja, R., Institute of Plant Science, Agricultural Research Organization (ARO), Newe Ya'ar Research Center, Ramat Yishay 30095, Israel
Tzuri, G., Institute of Plant Science, Agricultural Research Organization (ARO), Newe Ya'ar Research Center, Ramat Yishay 30095, Israel
Portnoy, V., Institute of Plant Science, Agricultural Research Organization (ARO), Newe Ya'ar Research Center, Ramat Yishay 30095, Israel
Cohen, S., Institute of Plant Science, Agricultural Research Organization, Volcani Research Center, Bet Dagan 50250, Israel
Schaffer, A., Institute of Plant Science, Agricultural Research Organization, Volcani Research Center, Bet Dagan 50250, Israel
Katzir, N., Institute of Plant Science, Agricultural Research Organization (ARO), Newe Ya'ar Research Center, Ramat Yishay 30095, Israel
Xu, Y., National Engineering Research Center for Vegetables (NERCV), Beijing Academy Agricultural and Forestry Science, Beijing 100097, China
Zhang, H., National Engineering Research Center for Vegetables (NERCV), Beijing Academy Agricultural and Forestry Science, Beijing 100097, China
Fukino, N., National Institute of Vegetable and Tea Science (NIVTS), 360 Kusawa, Ano, Tsu, Mie, 514-2392, Japan
Matsumoto, S., National Institute of Vegetable and Tea Science (NIVTS), 360 Kusawa, Ano, Tsu, Mie, 514-2392, Japan
Garcia-Mas, J., IRTA, Center for Research in Agricultural Genomics (CSIC-IRTA-UAB), Campus UAB, Edifici CRAG, 08193 Bellaterra (Barcelona), Spain
Monforte, A.J., Instituto de Biología Molecular y Celular de Plantas (IBMCP), Universidad Politécnica de Valencia (UPV), Consejo Superior de Investigaciones Cientificas (CSIC), Ciudad Politecnica de la Innovacion (CPI), Ed. 8E. C/Ingeniero Fausto Elio s/n, 46022 Valencia, Spain, IRTA, Center for Research in Agricultural Genomics (CSIC-IRTA-UAB), Campus UAB, Edifici CRAG, 08193 Bellaterra (Barcelona), Spain
A consensus linkage map for molecular markers and Quantitative Trait Loci associated with economically important traits in melon (Cucumis melo L.)
Background: A number of molecular marker linkage maps have been developed for melon (Cucumis melo L.) over the last two decades. However, these maps were constructed using different marker sets, thus, making comparative analysis among maps difficult. In order to solve this problem, a consensus genetic map in melon was constructed using primarily highly transferable anchor markers that have broad potential use for mapping, synteny, and comparative quantitative trait loci (QTL) analysis, increasing breeding effectiveness and efficiency via marker-assisted selection (MAS).Results: Under the framework of the International Cucurbit Genomics Initiative (ICuGI, http://www.icugi.org), an integrated genetic map has been constructed by merging data from eight independent mapping experiments using a genetically diverse array of parental lines. The consensus map spans 1150 cM across the 12 melon linkage groups and is composed of 1592 markers (640 SSRs, 330 SNPs, 252 AFLPs, 239 RFLPs, 89 RAPDs, 15 IMAs, 16 indels and 11 morphological traits) with a mean marker density of 0.72 cM/marker. One hundred and ninety-six of these markers (157 SSRs, 32 SNPs, 6 indels and 1 RAPD) were newly developed, mapped or provided by industry representatives as released markers, including 27 SNPs and 5 indels from genes involved in the organic acid metabolism and transport, and 58 EST-SSRs. Additionally, 85 of 822 SSR markers contributed by Syngenta Seeds were included in the integrated map. In addition, 370 QTL controlling 62 traits from 18 previously reported mapping experiments using genetically diverse parental genotypes were also integrated into the consensus map. Some QTL associated with economically important traits detected in separate studies mapped to similar genomic positions. For example, independently identified QTL controlling fruit shape were mapped on similar genomic positions, suggesting that such QTL are possibly responsible for the phenotypic variability observed for this trait in a broad array of melon germplasm.Conclusions: Even though relatively unsaturated genetic maps in a diverse set of melon market types have been published, the integrated saturated map presented herein should be considered the initial reference map for melon. Most of the mapped markers contained in the reference map are polymorphic in diverse collection of germplasm, and thus are potentially transferrable to a broad array of genetic experimentation (e.g., integration of physical and genetic maps, colinearity analysis, map-based gene cloning, epistasis dissection, and marker-assisted selection). © 2011 Diaz et al; licensee BioMed Central Ltd.
Scientific Publication
You may also be interested in